Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs9472941 | chr6:46933517 | A/G | 1.58E-5 | 406 | 15.13 | 16.73 | 12.5 | KM Plot |
| LGG | rs9472943 | chr6:46933962 | A/G | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs9475768 | chr6:56905042 | A/G | 3.38E-6 | 405 | 15.13 | 15.93 | 7.8 | KM Plot |
| LGG | rs9475782 | chr6:57002140 | C/T | 3.3E-6 | 405 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs9475783 | chr6:57020270 | C/G | 3.13E-6 | 406 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs9475786 | chr6:57032004 | T/C | 3.26E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs9475788 | chr6:57057219 | A/G | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs9503230 | chr6:2609373 | A/G | 0.000186 | 391 | 16.37 | 14.92 | 13.38 | KM Plot |
| LGG | rs9503232 | chr6:2621887 | T/C | 5.12E-5 | 387 | 15.23 | 14.93 | 13.38 | KM Plot |
| LGG | rs9503234 | chr6:2626388 | C/T | 2.05E-6 | 387 | 16.23 | 14.85 | 13.38 | KM Plot |
| LGG | rs9542785 | chr13:72511249 | A/G | 1.25E-10 | 407 | 15.33 | 17.73 | 5.93 | KM Plot |
| LGG | rs9542881 | chr13:72765077 | G/T | 1.59E-5 | 407 | 13.78 | 14.93 | 15.6 | KM Plot |
| LGG | rs9575719 | chr13:85616528 | C/T | 0.000109 | 407 | 15.33 | 15.57 | 8.22 | KM Plot |
| LGG | rs9591125 | chr13:48538185 | T/G | 1.25E-5 | 406 | 15.37 | 15.22 | 4.17 | KM Plot |
| LGG | rs9611598 | chr22:41871463 | A/G | 2.95E-5 | 407 | 8.03 | 11.43 | 15.93 | KM Plot |